 Software:Some computer programs for population genetic analysis and other
software links : -
1- GENEPOP (Michel Raymond and
Francois Rousset): - General program for population genetic analysis. It can be
downloaded via ftp to ftp.cefe.cnrs-mop.fr in the directory /PUB/PC/MSDOS/GENEPOP.
An internet version of GENEPOP is also available from http://www.curtin.edu.au/curtin/dept/biomed/teach/genepop/web_docs/
2- ARLEQUIN (Laurent Excoffier's
group): - General program for population genetic analysis. http://anthropologie.unige.ch/arlequin/
3- GDA (Genetic Data Analysis by
Paul O. Lewis and Dmitri Zaykin). Designed to accompany the second edition of Bruce
Weir's book "Genetic Data Analysis" (1996. Sinauer Associates, Inc. Publishers,
Sunderland, Massachusetts). http://alleyn.eeb.uconn.edu/gda/
4- POPGENE (Francis Yeh,
Rongcai Yang and Timothy Boyle): - General program
for population genetic analysis. http://www.ualberta.ca/~fyeh/index.htm
5- MICROSAT
(Eric Minch): - Microsatellite distance program. http://lotka.stanford.edu/microsat/
6- DISPAN (Tasuya Ota): -
Genetic Distance and Phylogenetic Analysis. http://med-humgen14.bu.edu/ota/tatsuya.html
7- RESTDATA (Tasuya Ota):
- Restriction data and Phylogenetic Analysis.
http://med-humgen14.bu.edu/ota/tatsuya.htm
8- RSTCALC (Simon Goodman): -
Analyses of population structure, genetic differentiation and gene flow using
microsatellite data. http://helios.bto.ed.ac.uk/evolgen/
9- CERVUS (Tristan Marshal):-
parentage analysis using likelihoods. http://helios.bto.ed.ac.uk/evolgen/
10- RELATEDNESS and KINSHIP
(Keith F. Goodnight): - Programs for population genetic and
relatedness calculations. http://gsoft.smu.edu/GSoft.html
11- PHYLIP Phylogeny Package and several other programs for phylogey
(J. Felsenstein's group): - http://evolution.genetics.washington.edu/phylip/software.html
12 - LAMARC (Joe Felsenstein's group): - several programs for
computing population parameters, such as population size, population growth rate and
migration rates by using likelihoods for samples of data (sequences,microsatellites, and
electrophoretic polymorphisms) from populations. http://evolution.genetics.washington.edu/lamarc.html
13- Other Phylogeny software related links compiled by David
Maddison and Wayne Maddison [http://phylogeny.arizona.edu/tree/programs/programs.html]
as part of their project Tree of Life on the WEB [http://phylogeny.arizona.edu/tree/phylogeny.html]
Database searches & WEB resources:
Archives for Biological Software and Databases Around the World: - http://www.bis.med.jhmi.edu/Dan/software/biol-links.html
BIOSCI - bionet Electronic Newsgroup Network for Biology: - http://www.bio.net/
BLAST:
- http://www.ncbi.nlm.nih.gov/BLAST/
EBI (European Bioinformatics
Institute) databases (also links to interesting software): - http://www.ebi.ac.uk/dbases/topdata.html
NCBI (National Center for Biotechnology Information) databases: - http://www.ncbi.nlm.nih.gov/Entrez/
NWFSC (Northwest Fisheries Science Center) Molecular Biology
Protocols: - http://www.nwfsc.noaa.gov/protocols/
PCR Jump Station - Web page for information and links on all aspects
of PCR: - http://www.horizonpress.com/pcr/
PCR tips: - http://medgen.iupui.edu/~ohenega/PCR.html
Suppliers for Molecular Biology:
Advanced Biotechnologies: - http://www.adbio.co.uk/about.htm
Amersham:- http://www.amersham.co.uk/
Camlab: - http://www.camlab.co.uk/
Fisher Scientific: - http://www.fisher1.com/
Hybaid: - http://www.hybaid.co.uk/
ICN Pharmaceuticals, Inc.: - http://www.icnpharm.com/
Life Technologies, Inc.: - http://www.lifetech.com/
Li-Cor, Inc.: - http://www.licor.com/
NEN (Dupoint) Life Science Products: - http://www.nenlifesci.com/
Perkin-Elmer: - http://www.perkin-elmer.com/
PE Applied Biosystems: - http://www2.perkin-elmer.com/ab/index.htm
Promega: - http://www.promega.com/
Stratagene: - http://www.stratagene.com/
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