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SNP 

IUPAC DNA         IUPAC Protein     Specialised Links

 

This tool is provided to validate genotyping results...It is currently under development and should be improved shortly.

 

  • Use this tool to retrieve the dbSNP genotype and allele frequency report from NCBI.

Follow the link below and insert 'your' rs number of interest in the place of "13039997".

http://ncbi.nlm.nih.gov/SNP/genoReport.cgi?rpt=html&idtype=snp&id=13039997

 

  • To retrieve a reference SNP cluster report from dbSNP

Follow the link below and insert 'your' rs number of interest in the place of "13339902".

http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=13339902

 

  • To retrieve details on SNPs from The SNP Consortium (TSC)

Follow the link below and replace the gene symbol of interest in the place of "ctgf".

http://snp.cshl.org/cgi-bin/genesearch?searchterm=ctgf

 

  • To retrieve details on SNPs from UCSC browser

Follow the link below and replace the rs number of interest in the place of "12500601" - highlighted in bold red text

http://genome.ucsc.edu/cgi-bin/hgc?hgsid=31073104&o=56233197&t=56233198&g=snpMap&i=rs12500601&c=chr4&l=56214200&r=56291736&db=hg16&pix=620

http://genome.ucsc.edu/cgi-bin/hgc?hgsid=31073104&o=56233197&t=56233198&g=snpMap&i=rs12500601&c=chr4&l=56214200&r=56291736&db=hg16&pix=620

 

  • To retrieve details on SNPs from The SNP500 site

Follow the link below and replace the rs number (without the rs characters) of interest in the place of "1143627".

http://snp500cancer.nci.nih.gov/population.cfm?snp_id=IL1B-03&dbsnp_id=1143627

 

If you experience any difficulty using this tool, then please contact me