Functional Analysis

 

GeneTerm Linker: Web based post enrichment association by non-redundant reciprocal linkage tool.

 

DAVID: Functional annotation, classification and Id conversion of gene expression data.

 

EASE: The stand-alone version of DAVID application for windows.

 

GSEA: Gene Set Enrichment Analysis. A tool with a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. 

 

HEFaLMP: a functional map of the human genome. 

 

GOstat: Find statistically overrepresented GO terms within a group of genes.

ARACNE: Algorithm for the Reconstruction of Accurate Cellular Networks through the use of expresson profiles.

STRING: Known and Predicted Protein-Protein Interactions. http://string.embl.de/

NetworKIN: NetworKIN is a method for predicting in vivo kinase-substrate relationships, that augments consensus motifs with context for kinases and phosphoproteins.

  

R / Bioconductor based packages: