Integration Tools

 

GATExplorer: Genomic And Transcriptomic Explorer, a bioinformatic web platform that integrates a gene loci browser with nucleotide level mappings of oligo probes from expression microarrays

 

Genomica: Analysis and visualization tool for genomic data, which can integrate gene expression data, DNA sequence data, and gene and experiment annotation information.

 

R / Bioconductor based packages:

  • DRI: Integrative analysis of DNA copy number and gene expression data.
  • Pint: Integrative analysis of high-throughput RNA and DNA profiling data for cancer gene discovery and functional analysis of chromosomal aberrations.
  • Intcomp: R-based benchmarking pipeline for integrative cancer gene discovery algorithms.